Andrew Teschendorff : rechercher sur Z-Library

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1

Variational Bayesian Matrix Factorization for Bounded Support Data

Ma, Zhanyu, Teschendorff, Andrew E., Leijon, Arne, Qiao, Yuanyuan, Zhang, Honggang, Guo, Jun

Journal:

IEEE Transactions on Pattern Analysis and Machine Intelligence

Année:

2015

Langue:

english

Fichier:

PDF, 943 KB

english, 2015

2

Avoiding common pitfalls in machine learning omic data science

Teschendorff, Andrew E.

Journal:

Nature Materials

Année:

2018

Langue:

english

Fichier:

PDF, 1.88 MB

english, 2018

3

Approximate entropy of network parameters

West, James, Lacasa, Lucas, Severini, Simone, Teschendorff, Andrew

Journal:

Physical Review E

Année:

2012

Langue:

english

Fichier:

PDF, 340 KB

english, 2012

4

Integrated Genetic and Epigenetic Analysis Identifies Haplotype-Specific Methylation in the FTO Type 2 Diabetes and Obesity Susceptibility Locus

Bell, Christopher G., Finer, Sarah, Lindgren, Cecilia M., Wilson, Gareth A., Rakyan, Vardhman K., Teschendorff, Andrew E., Akan, Pelin, Stupka, Elia, Down, Thomas A., Prokopenko, Inga, Morison, Ian M.

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 361 KB

english, 2010

5

Co-amplification of 8p12 and 11q13 in breast cancers is not the result of a single genomic event

Anna L. Paterson, Jessica C. M. Pole, Katherine A. Blood, Maria J. Garcia, Susanna L. Cooke, Andrew E. Teschendorff, Yanzhong Wang, Suet-Feung Chin, Bauke Ylstra, Carlos Caldas, Paul A. W. Edwards

Journal:

Genes, Chromosomes and Cancer

Année:

2007

Langue:

english

Fichier:

PDF, 885 KB

english, 2007

6

Common germline polymorphisms in COMT, CYP19A1, ESR1, PGR, SULT1E1 and STS and survival after a diagnosis of breast cancer

Miriam S. Udler, Elizabeth M. Azzato, Catherine S. Healey, Shahana Ahmed, Karen A. Pooley, David Greenberg, Mitul Shah, Andrew E. Teschendorff, Carlos Caldas, Alison M. Dunning, Elaine A. Ostrander, N

Journal:

International Journal of Cancer

Année:

2009

Langue:

english

Fichier:

PDF, 164 KB

english, 2009

7

DART: Denoising Algorithm based on Relevance network Topology improves molecular pathway activity inference

Yan Jiao, Katherine Lawler, Gargi S Patel, Arnie Purushotham, Annette F Jones, Anita Grigoriadis, Andrew Tutt, Tony Ng, Andrew E Teschendorff

Journal:

BMC Bioinformatics

Année:

2011

Langue:

english

Fichier:

PDF, 426 KB

english, 2011

8

Critical evaluation of HPV16 gene copy number quantification by SYBR green PCR

Ian Roberts, Grace Ng, Nicola Foster, Margaret Stanley, Michael T Herdman, Mark R Pett, Andrew Teschendorff, Nicholas Coleman

Journal:

BMC Biotechnology

Année:

2008

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2008

9

Genome-wide DNA methylation analysis for diabetic nephropathy in type 1 diabetes mellitus

Christopher G Bell, Andrew E Teschendorff, Vardhman K Rakyan, Alexander P Maxwell, Stephan Beck, David A Savage

Journal:

BMC Medical Genomics

Année:

2010

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2010

10

ESR1 gene amplification in breast cancer: a common phenomenon?

Brown, Lindsay A, Hoog, Jeremy, Chin, Suet-Feung, Tao, Yu, Zayed, Abd Alnaser, Chin, Koei, Teschendorff, Andrew E, Quackenbush, John F, Marioni, John C, Leung, Samuel

Journal:

Nature Genetics

Année:

2008

Langue:

english

Fichier:

PDF, 137 KB

english, 2008

11

A 1 Mb minimal amplicon at 8p11–12 in breast cancer identifies new candidate oncogenes

Garcia, Maria J, Pole, Jessica C M, Chin, Suet-Feung, Teschendorff, Andrew, Naderi, Ali, Ozdag, Hilal, Vias, Maria, Kranjac, Tanja, Subkhankulova, Tatiana, Paish, Claire

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 508 KB

english, 2005

12

Distribution of breakpoints on chromosome 18 in breast, colorectal, and pancreatic carcinoma cell lines

Amber E. Alsop, Andrew E. Teschendorff, Paul A.W. Edwards

Journal:

Cancer Genetics and Cytogenetics

Année:

2006

Langue:

english

Fichier:

PDF, 612 KB

english, 2006

13

Differential expression of selected histone modifier genes in human solid cancers

Hilal Özdağ, Andrew E Teschendorff, Ahmed Ashour Ahmed, Sarah J Hyland, Cherie Blenkiron, Linda Bobrow, Abhi Veerakumarasivam, Glynn Burtt, Tanya Subkhankulova, Mark J Arends, V Peter Collins, David B

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 561 KB

english, 2006

14

Improved prognostic classification of breast cancer defined by antagonistic activation patterns of immune response pathway modules

Andrew E Teschendorff, Sergio Gomez, Alex Arenas, Dorraya El-Ashry, Marcus Schmidt, Mathias Gehrmann, Carlos Caldas

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.99 MB

english, 2010

15

Increased entropy of signal transduction in the cancer metastasis phenotype

Andrew E Teschendorff, Simone Severini

Journal:

BMC Systems Biology

Année:

2010

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2010

16

TGFβ induces the formation of tumour-initiating cells in claudinlow breast cancer

Bruna, Alejandra, Greenwood, Wendy, Le Quesne, John, Teschendorff, Andrew, Miranda-Saavedra, Diego, Rueda, Oscar M., Sandoval, Jose L., Vidakovic, Ana Tufegdzic, Saadi, Amel, Pharoah, Paul, Stingl, Jo

Journal:

Nature Communications

Année:

2012

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2012

17

Genomic gain of 5p15 leads to over-expression of Misu (NSUN2) in breast cancer

Michaela Frye, Ilaria Dragoni, Suet-Feung Chin, Immaculada Spiteri, Agata Kurowski, Elena Provenzano, Andrew Green, Ian O. Ellis, Donna Grimmer, Andrew Teschendorff, Christos C. Zouboulis, Carlos Cald

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 801 KB

english, 2010

18

Genome-wide DNA methylation analysis of archival formalin-fixed paraffin-embedded tissue using the Illumina Infinium HumanMethylation27 BeadChip

Christina Thirlwell, Marianne Eymard, Andrew Feber, Andrew Teschendorff, Kerra Pearce, Matthias Lechner, Martin Widschwendter, Stephan Beck

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 726 KB

english, 2010

19

Epigenetics makes its mark on women-specific cancers—an opportunity to redefine oncological approaches?

Martin Widschwendter, Allison Jones, Andrew E. Teschendorff

Journal:

Gynecologic Oncology

Année:

2013

Langue:

english

Fichier:

PDF, 1.74 MB

english, 2013

20

Phenotypic and functional characterisation of the luminal cell hierarchy of the mammary gland

Mona Shehata, Andrew Teschendorff, Gemma Sharp, Nikola Novcic, I Alasdair Russell, Stefanie Avril, Michael Prater, Peter Eirew, Carlos Caldas, Christine J Watson

Journal:

Breast Cancer Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2012

21

A comparison of feature selection and classification methods in DNA methylation studies using the Illumina Infinium platform

Joanna Zhuang, Martin Widschwendter, Andrew E Teschendorff

Journal:

BMC Bioinformatics

Année:

2012

Langue:

english

Fichier:

PDF, 481 KB

english, 2012

22

Comments on: Interpretation of genome-wide infinium methylation data from ligated DNA in formalin-fixed paraffin-embedded paired tumor and normal tissue

Christina Thirlwell, Andrew Feber, Matthias Lechner, Andrew E Teschendorff, Stephan Beck

Journal:

BMC Research Notes

Année:

2012

Langue:

english

Fichier:

PDF, 231 KB

english, 2012

23

Prognostic gene network modules in breast cancer hold promise

Andrew E Teschendorff, Yan Jiao, Carlos Caldas

Journal:

Breast Cancer Research

Année:

2010

Langue:

english

Fichier:

PDF, 129 KB

english, 2010

24

The breast cancer somatic 'muta-ome': tackling the complexity

Andrew E Teschendorff, Carlos Caldas

Journal:

Breast Cancer Research

Année:

2009

Langue:

english

Fichier:

PDF, 62 KB

english, 2009

25

A robust classifier of high predictive value to identify good prognosis patients in ER-negative breast cancer

Andrew E Teschendorff, Carlos Caldas

Journal:

Breast Cancer Research

Année:

2008

Langue:

english

Fichier:

PDF, 765 KB

english, 2008

26

High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer

Suet F Chin, Andrew E Teschendorff, John C Marioni, Yanzhong Wang…

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 1.47 MB

english, 2007

27

An immune response gene expression module identifies a good prognosis subtype in estrogen receptor negative breast cancer

Andrew E Teschendorff, Ahmad Miremadi, Sarah E Pinder, Ian O Ellis…

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2007

28

A consensus prognostic gene expression classifier for ER positive breast cancer

Andrew E Teschendorff, Ali Naderi, Nuno L Barbosa-Morais, Sarah E Pinder…

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2006

29

Epigenetic variability in cells of normal cytology is associated with the risk of future morphological transformation

Andrew E Teschendorff, Allison Jones, Heidi Fiegl, Alexandra Sargent…

Journal:

Genome Medicine

Année:

2012

Langue:

english

Fichier:

PDF, 495 KB

english, 2012

30

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

Ross-Innes, Caryn S., Stark, Rory, Teschendorff, Andrew E., Holmes, Kelly A., Ali, H. Raza, Dunning, Mark J., Brown, Gordon D., Gojis, Ondrej, Ellis, Ian O., Green, Andrew R., Ali, Simak, Chin, Suet-F

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 798 KB

english, 2012

31

Signalling entropy: A novel network-theoretical framework for systems analysis and interpretation of functional omic data

Teschendorff, Andrew E., Sollich, Peter, Kuehn, Reimer

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 873 KB

english, 2014

32

1032 Host-Environment Interactions Shape the Risk for Ulcerative Colitis: Results From a Twin Epigenome-Wide Association Study

Haesler, Robert, Feng, Zhe, Bäckdahl, Liselotte, Spehlmann, Martina E., Franke, Andre, Teschendorff, Andrew, Rakyan, Vardhman, Down, Thomas A., Wilson, Gareth A., Feber, Andrew, Beck, Stephan, Schreib

Journal:

Gastroenterology

Année:

2013

Langue:

english

Fichier:

PDF, 342 KB

english, 2013

33

Data integration in the era of omics: current and future challenges

Gomez-Cabrero, David, Abugessaisa, Imad, Maier, Dieter, Teschendorff, Andrew, Merkenschlager, Matthias, Gisel, Andreas, Ballestar, Esteban, Bongcam-Rudloff, Erik, Conesa, Ana, Tegnér, Jesper

Journal:

BMC Systems Biology

Année:

2014

Langue:

english

Fichier:

PDF, 911 KB

english, 2014

34

Network transfer entropy and metric space for causality inference

Banerji, Christopher R. S., Severini, Simone, Teschendorff, Andrew E.

Journal:

Physical Review E

Année:

2013

Langue:

english

Fichier:

PDF, 717 KB

english, 2013

35

A VARIATIONAL BAYES BETA MIXTURE MODEL FOR FEATURE SELECTION IN DNA METHYLATION STUDIES

MA, ZHANYU, TESCHENDORFF, ANDREW E.

Journal:

Journal of Bioinformatics and Computational Biology

Année:

2013

Langue:

english

Fichier:

PDF, 610 KB

english, 2013

36

An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform

Marabita, Francesco, Almgren, Malin, Lindholm, Maléne E., Ruhrmann, Sabrina, Fagerström-Billai, Fredrik, Jagodic, Maja, Sundberg, Carl J., Ekström, Tomas J., Teschendorff, Andrew E., Tegnér, Jesper, G

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 7.12 MB

english, 2013

37

Denoising perturbation signatures reveal an actionable AKT-signaling gene module underlying a poor clinical outcome in endocrine-treated ER+ breast cancer

Teschendorff, Andrew E, Li, Linlin, Yang, Zhen

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.88 MB

english, 2015

38

Correlation of Smoking-Associated DNA Methylation Changes in Buccal Cells With DNA Methylation Changes in Epithelial Cancer

Teschendorff, Andrew E., Yang, Zhen, Wong, Andrew, Pipinikas, Christodoulos P., Jiao, Yinming, Jones, Allison, Anjum, Shahzia, Hardy, Rebecca, Salvesen, Helga B., Thirlwell, Christina, Janes, Samuel M

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 575 KB

english, 2015

39

[Translational Bioinformatics] Computational and Statistical Epigenomics Volume 7 || Introduction to Data Types in Epigenomics

Teschendorff, Andrew E.

Année:

2015

Langue:

english

Fichier:

PDF, 687 KB

english, 2015

40

ABRCA1-mutation associated DNA methylation signature in blood cells predicts sporadic breast cancer incidence and survival

Anjum, Shahzia, Fourkala, Evangelia-Ourania, Zikan, Michal, Wong, Andrew, Gentry-Maharaj, Aleksandra, Jones, Allison, Hardy, Rebecca, Cibula, David, Kuh, Diana, Jacobs, Ian J, Teschendorff, Andrew E,

Journal:

Genome Medicine

Année:

2014

Langue:

english

Fichier:

PDF, 1.90 MB

english, 2014

41

[Translational Bioinformatics] Computational and Statistical Epigenomics Volume 7 ||

Teschendorff, Andrew E.

Année:

2015

Langue:

english

Fichier:

PDF, 4.91 MB

english, 2015

42

[Translational Bioinformatics] Computational and Statistical Epigenomics Volume 7 || Epigenomic Biomarkers for the Advance of Personalized Medicine

Teschendorff, Andrew E.

Année:

2015

Langue:

english

Fichier:

PDF, 331 KB

english, 2015

43

[Translational Bioinformatics] Computational and Statistical Epigenomics Volume 7 || Towards a Mechanistic Understanding of Epigenetic Dynamics

Teschendorff, Andrew E.

Année:

2015

Langue:

english

Fichier:

PDF, 726 KB

english, 2015

44

[Translational Bioinformatics] Computational and Statistical Epigenomics Volume 7 || DNA Methylation and Cell-Type Distribution

Teschendorff, Andrew E.

Année:

2015

Langue:

english

Fichier:

PDF, 374 KB

english, 2015

45

Increased signaling entropy in cancer requires the scale-free property of protein interaction networks

Teschendorff, Andrew E., Banerji, Christopher R. S., Severini, Simone, Kuehn, Reimer, Sollich, Peter

Journal:

Scientific Reports

Année:

2015

Langue:

english

Fichier:

PDF, 1.53 MB

english, 2015

46

Using high-density DNA methylation arrays to profile copy number alterations

Feber, Andrew, Guilhamon, Paul, Lechner, Matthias, Fenton, Tim, Wilson, Gareth A, Thirlwell, Christina, Morris, Tiffany J, Flanagan, Adrienne M, Teschendorff, Andrew E, Kelly, John D, Beck, Stephan

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1.94 MB

english, 2014

47

Differential network entropy reveals cancer system hallmarks

West, James, Bianconi, Ginestra, Severini, Simone, Teschendorff, Andrew E.

Journal:

Scientific Reports

Année:

2012

Langue:

english

Fichier:

PDF, 528 KB

english, 2012

48

Role of DNA Methylation and Epigenetic Silencing of HAND2 in Endometrial Cancer Development

Jones, Allison, Teschendorff, Andrew E., Li, Quanxi, Hayward, Jane D., Kannan, Athilakshmi, Mould, Tim, West, James, Zikan, Michal, Cibula, David, Fiegl, Heidi, Lee, Shih-Han, Wik, Elisabeth, Hadwin,

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2013

49

Allele-Specific Up-Regulation of FGFR2 Increases Susceptibility to Breast Cancer

Meyer, Kerstin B., Maia, Ana-Teresa, O'Reilly, Martin, Teschendorff, Andrew E., Chin, Suet-Feung, Caldas, Carlos, Ponder, Bruce A. J., Chakravarti, Aravinda

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 540 KB

english, 2008

50

Elucidating the Altered Transcriptional Programs in Breast Cancer using Independent Component Analysis

Teschendorff, Andrew E., Journée, Michel, Absil, Pierre A., Sepulchre, Rodolphe, Caldas, Carlos

Journal:

PLoS Computational Biology

Année:

2007

Langue:

english

Fichier:

PDF, 1000 KB

english, 2007